questions - I wondered what are your plans? & I wondered what your plans are

Are Both

"I wondered what are your plans?"

&

I wondered what your plans are."

Correct?

There is a little difference in the the existence of quotation mark.

Answer

Yes, they do mean the same with the caveat that the first example

I wondered what are your plans?

Would normally require a comma

I wondered, what are your plans?

or a swap to

I wondered what were your plans (eg for the weekend)?